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Events
JGI - Why Sequence Sweet Orange?
http://www.jgi.doe.gov/sequencing/why/sweetorange.html
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Sorry for the delay in getting this information to the website, I have been focusing on my dissertation chapters. -mL
To obtain JGI sweet orange genomic sequences corresponding to a citrus ESTs:
1) Do a BLAST search at the server : http://138.23.191.145/blast/index.html
In the Database box at the top of the page, select "JGI Citrus".
This will return the BLAST hits
2) To fetch the actual sequences, go to http://harvest-web.org/utilmenu.wc?job=JGI_Citmenu
This allows you to enter a text file of sequence ids and retrieve the sequences.
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Coming soon, a multi-hundred gene-specifc locus map of C. sinensis.
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Current
Citrus EST entries in GenBank dbEST
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| Citrus sinensis | 94,738
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| Citrus clementina | 63,035
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| Poncirus trifoliata | 29,707
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| Citrus x paradisi | 8,039
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| Citrus x paradisi x Poncirus trifoliata | 7,954
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| Citrus reticulata x Citrus temple | 5,823
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| Citrus aurantium | 5,226
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| Citrus unshiu | 4,489
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| Citrus reticulata | 3,640
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| Citrus reshni | 2,082
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| Citrus clementina x Citrus tangerina | 1,766
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| Citrus macrophylla | 1,076
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| Citrus sinensis x Poncirus trifoliata | 1,052
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| Citrus jambhiri | 989
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| Citrus medica | 650
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| Citrus tamurana | 211
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| Citrus natsudaidai | 202
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| Citrus hassaku | 154
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| Citrus clementina x Citrus reticulata | 74
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230,907
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- Matthew Lyon - UCR Fri May 16 04:04:03 PDT 2008
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