International Citrus Genomics Consortium
International Citrus Genome / Genomics Consortium

Citrus
Genomics Google
 
  About Us
  Events
  Participants
  - Australia
  - Brazil
  - China
  - France
  - Israel
  - Italy
  - Japan
  - Spain
  - USA
  Resources
  - BAC Libraries
  - cDNA Libraries
  - EST Assemblies
  - Germplasm
  - Maps
  - Markers

Events


JGI - Why Sequence Sweet Orange?
http://www.jgi.doe.gov/sequencing/why/sweetorange.html

---

Sorry for the delay in getting this information to the website, I have been focusing on my dissertation chapters. -mL

To obtain JGI sweet orange genomic sequences corresponding to a citrus ESTs:

1) Do a BLAST search at  the server : http://138.23.191.145/blast/index.html

       In the Database box at the top of the page, select "JGI Citrus". 
       This will return the BLAST hits

2) To fetch the actual sequences, go to http://harvest-web.org/utilmenu.wc?job=JGI_Citmenu

This allows you to enter a text file of sequence ids and retrieve the sequences.

---

Coming soon, a multi-hundred gene-specifc locus map of C. sinensis.

 

Current Citrus EST entries in GenBank dbEST

Citrus sinensis
94,738
Citrus clementina
63,035
Poncirus trifoliata
29,707
Citrus x paradisi
8,039
Citrus x paradisi x Poncirus trifoliata
7,954
Citrus reticulata x Citrus temple
5,823
Citrus aurantium
5,226
Citrus unshiu
4,489
Citrus reticulata
3,640
Citrus reshni
2,082
Citrus clementina x Citrus tangerina
1,766
Citrus macrophylla
1,076
Citrus sinensis x Poncirus trifoliata
1,052
Citrus jambhiri
989
Citrus medica
650
Citrus tamurana
211
Citrus natsudaidai
202
Citrus hassaku
154
Citrus clementina x Citrus reticulata
74
230,907

for a weekly update by email, click here.
- Matthew Lyon - UCR
Fri May 16 04:04:03 PDT 2008
 
copyright (c) 2004 ICGC
Mon May 5 19:53:01 PDT 2008 -mL